IQ-TREE multicore version 2.0.3 for Linux 64-bit built Apr 26 2020
Developed by Bui Quang Minh, Nguyen Lam Tung, Olga Chernomor,
Heiko Schmidt, Dominik Schrempf, Michael Woodhams.

Host:    cn47 (AVX2, FMA3, 125 GB RAM)
Command: /home/smg655/.conda/envs/iqtree/bin/iqtree -t All_Species_m2_five_prime_UTR_BS.nwk -s All_Species_m2_five_prime_UTR.nexus --scf 100 --prefix concord -T 2
Seed:    880127 (Using SPRNG - Scalable Parallel Random Number Generator)
Time:    Wed Apr  7 13:01:07 2021
Kernel:  AVX+FMA - 2 threads (2 CPU cores detected)

Reading alignment file All_Species_m2_five_prime_UTR.nexus ... Nexus format detected
Alignment has 26 sequences with 6517 columns, 4882 distinct patterns
6449 parsimony-informative, 0 singleton sites, 68 constant sites
WARNING: Some sequence names are changed as follows:
ActMar  AA -> ActMar__AA
AldGig  AA -> AldGig__AA
ApaSpi  NA -> ApaSpi__NA
BatTri  AN -> BatTri__AN
CarIns  AA -> CarIns__AA
CheAbi  AA -> CheAbi__AA
CheMyd  AA -> CheMyd__AA
CheSer  AA -> CheSer__AA
ChrPic  AA -> ChrPic__AA
CuoAmb  GA -> CuoAmb__GA
CuoMcc  AA -> CuoMcc__AA
DerCor  AA -> DerCor__AA
DerMaw  AC -> DerMaw__AC
EmyOrb  NN -> EmyOrb__NN
EmySub  AA -> EmySub__AA
GopAga  AA -> GopAga__AA
MalTer  AA -> MalTer__AA
MauRee  AA -> MauRee__AA
MesTub  AA -> MesTub__AA
PelCas  GA -> PelCas__GA
PelSin  AA -> PelSin__AA
PlaMeg  AA -> PlaMeg__AA
PodExp  GA -> PodExp__GA
SteCar  AC -> SteCar__AC
TerCar  AA -> TerCar__AA
TraScr  AA -> TraScr__AA

            Gap/Ambiguity  Composition  p-value
   1  ActMar__AA    1.93%    passed     99.31%
   2  AldGig__AA    2.06%    passed     24.04%
   3  ApaSpi__NA    3.01%    passed     46.84%
   4  BatTri__AN   45.22%    passed     85.17%
   5  CarIns__AA    7.79%    passed     85.52%
   6  CheAbi__AA    6.03%    passed     39.30%
   7  CheMyd__AA    0.86%    passed     96.35%
   8  CheSer__AA    4.10%    passed     68.41%
   9  ChrPic__AA    0.84%    passed     76.29%
  10  CuoAmb__GA    2.61%    passed     90.24%
  11  CuoMcc__AA    1.07%    passed     87.58%
  12  DerCor__AA    1.20%    passed     17.01%
  13  DerMaw__AC    2.16%    passed     87.26%
  14  EmyOrb__NN   41.98%    passed     43.80%
  15  EmySub__AA    1.93%    passed     56.83%
  16  GopAga__AA    0.60%    passed     46.49%
  17  MalTer__AA    6.97%    passed     61.87%
  18  MauRee__AA    0.34%    passed     96.27%
  19  MesTub__AA    3.30%    passed     96.23%
  20  PelCas__GA    4.30%    passed     15.36%
  21  PelSin__AA    2.50%    passed     59.52%
  22  PlaMeg__AA    0.74%    passed     68.28%
  23  PodExp__GA   11.60%    failed      0.07%
  24  SteCar__AC    3.18%    passed     19.84%
  25  TerCar__AA    1.86%    passed     90.25%
  26  TraScr__AA    1.18%    passed     71.69%
****  TOTAL         6.13%  1 sequences failed composition chi2 test (p-value<5%; df=3)
Reading tree All_Species_m2_five_prime_UTR_BS.nwk ...
un-rooted tree with 26 taxa and 49 branches
Computing site concordance factor...
0.072 sec
Tree with concordance factors written to concord.cf.tree
Annotated tree (best viewed in FigTree) written to concord.cf.tree.nex
Tree with branch IDs written to concord.cf.branch
Concordance factors per branch printed to concord.cf.stat
Date and Time: Wed Apr  7 13:01:08 2021
